Synthesis-View examples

Synthesis-View created the image below using the Synthesis-View sample file provided. The settings used:

  • Input file: sample-synth-view.txt
  • Title: Sample
  • Format: PNG

Synthesis-view-sample


Synthesis-View created the image below using the Synthesis-View sample SNP color file provided. The settings used:

  • Input file: sample-synth-view-snpcolor.txt
  • Title: SNP Names With User-Specified Colors
  • Format: PNG
  • Additional SNP locations?: Checked
  • Include p-value track?: Checked
  • Include direction of effect?: Checked
  • SNP position track?: Checked

Synthesis-view-colors


Synthesis-View created the image below using the Synthesis-View sample file provided. The settings used:

  • Input file: sample-synth-view.txt
  • LD file: sample-ld.txt
  • Title: Sample
  • Draw line at this p-value: 0.0001
  • Format: PNG
  • LD D-prime track?: Checked

Synthesis-view-sample-ld

Synthesis-View created the image below using the Synthesis-View sample file provided. The settings used:

  • Input file: sample-forest.txt
  • Title: Sample Forest
  • Format: PNG
  • Produce forest plot?: Checked
  • Minimum forest plot x-axis at zero?: Checked
  • Plot significant odds ratio larger?: Checked

Synthesis-view-forest


Synthesis-View created the interaction plot image below using the Synthesis-View sample interaction and Synthesis-View SNP source files provided. The settings used:

  • Input file: sample-synth-interaction.txt
  • SNP source file: sample-source.txt
  • Title: Sample Interaction
  • Format: PNG
  • Rotate?: Checked
  • Interaction plot?: Checked
  • Larger font?: Checked

Synthesis-view-interaction