PheWAS-View examples

PheWAS-View created the image below using the PheWAS-View sample file provided. The settings used:

  • Input file: phewas-view-input.txt
  • Title: Basic PheWAS-View Plot
  • Red line p value: 0.01
  • P value highlight threshold: 0.1
  • Format: PNG

Phewas-view-basic

PheWAS-View created the image below using the PheWAS-View extended sample file to produce a plot that displays the p values and direction of effect for a single SNP and multiple groups across different phenotypes. The settings used:

  • Input file: phewas-view-in-extended.txt
  • Group file: phewas-view-group.txt
  • Title: Single SNP results with multiple groups
  • Red line p value: 0.001
  • P value highlight threshold: 0.001
  • Format: PNG
  • Direction of effect?: Checked
Phewas-view-extended

PheWAS-View created the image below using the PheWAS-View extended sample file to produce a plot that displays the p values and direction of effect for a single SNP and multiple groups across different phenotypes. The settings used:

  • Input file: phewas-view-in-extended.txt
  • Group file: phewas-view-group.txt
  • Title: Single SNP results with multiple groups
  • Red line p value: 0.001
  • P value highlight threshold: 0.001
  • Format: PNG
  • Direction of effect?: Checked
  • Rotated?: Checked
  • Sample size track?: Checked
Phewas-view-rotated

PheWAS-View Sun examples

PheWAS-View created the image below using the PheWAS-View sample file provided. The settings used:

  • Input file: phewas-view-input.txt
  • Title: SNP Sun Plot
  • P value threshold: 0.4
  • SNP Name: rs6855911
  • Format: PNG

Phewas-sun-snp

PheWAS-View created the phenotype centered image below using the PheWAS-View sample file provided. The settings used:

  • Input file: phewas-view-input.txt
  • Title: SNP Sun Plot
  • P value threshold: 0.4
  • SNP Name: rs6855911
  • Format: PNG

Phewas-sun-snp